Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL6A3P12111 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
COL6A3P12111 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.72■□□□□ 0.59
COL6A3P12111 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 AC092658.1-201ENST00000505836 891 ntBASIC18.72■□□□□ 0.59
COL6A3P12111 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 AC004890.2-204ENST00000481968 304 ntBASIC18.72■□□□□ 0.59
COL6A3P12111 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.72■□□□□ 0.59
COL6A3P12111 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.72■□□□□ 0.59
COL6A3P12111 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
COL6A3P12111 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A3P12111 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A3P12111 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 AC009154.2-201ENST00000621177 724 ntBASIC18.71■□□□□ 0.59
COL6A3P12111 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.71■□□□□ 0.59
COL6A3P12111 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL6A3P12111 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 MIR4538-201ENST00000581377 78 ntBASIC18.71■□□□□ 0.59
COL6A3P12111 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 AC003101.2-201ENST00000612557 442 ntBASIC18.71■□□□□ 0.59
COL6A3P12111 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
COL6A3P12111 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.71■□□□□ 0.59
COL6A3P12111 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A3P12111 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
COL6A3P12111 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
COL6A3P12111 SPDYE21P-201ENST00000413323 827 ntBASIC18.71■□□□□ 0.58
COL6A3P12111 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.71■□□□□ 0.58
COL6A3P12111 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.71■□□□□ 0.58
COL6A3P12111 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.71■□□□□ 0.58
COL6A3P12111 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.71■□□□□ 0.58
COL6A3P12111 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.71■□□□□ 0.58
COL6A3P12111 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A3P12111 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A3P12111 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL6A3P12111 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A3P12111 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A3P12111 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.7■□□□□ 0.58
COL6A3P12111 AC140878.1-201ENST00000565277 250 ntBASIC18.7■□□□□ 0.58
COL6A3P12111 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 AC068587.9-201ENST00000641814 219 ntBASIC18.7■□□□□ 0.58
COL6A3P12111 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A3P12111 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
COL6A3P12111 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A3P12111 GPS2P2-201ENST00000430745 888 ntBASIC18.7■□□□□ 0.58
COL6A3P12111 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A3P12111 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A3P12111 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.7■□□□□ 0.58
COL6A3P12111 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A3P12111 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL6A3P12111 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.7■□□□□ 0.58
COL6A3P12111 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
COL6A3P12111 AC007967.3-201ENST00000434308 558 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 RNA5SP423-201ENST00000517127 109 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 AC068137.2-201ENST00000605408 478 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 GNAS-203ENST00000306120 1878 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.69■□□□□ 0.58
COL6A3P12111 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms