Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP2AO43633 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP2AO43633 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP2AO43633 RN7SL606P-201ENST00000472779 293 ntBASIC20.34■□□□□ 0.85
CHMP2AO43633 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP2AO43633 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP2AO43633 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.34■□□□□ 0.85
CHMP2AO43633 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP2AO43633 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP2AO43633 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.34■□□□□ 0.85
CHMP2AO43633 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP2AO43633 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP2AO43633 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP2AO43633 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP2AO43633 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP2AO43633 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP2AO43633 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CHMP2AO43633 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
CHMP2AO43633 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.33■□□□□ 0.85
CHMP2AO43633 DRAXINP1-201ENST00000437611 948 ntBASIC20.33■□□□□ 0.85
CHMP2AO43633 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.33■□□□□ 0.85
CHMP2AO43633 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP2AO43633 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 CLEC4GP1-201ENST00000596555 870 ntBASIC20.33■□□□□ 0.85
CHMP2AO43633 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP2AO43633 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.33■□□□□ 0.84
CHMP2AO43633 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.84
CHMP2AO43633 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.33■□□□□ 0.84
CHMP2AO43633 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.33■□□□□ 0.84
CHMP2AO43633 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
CHMP2AO43633 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP2AO43633 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.33■□□□□ 0.84
CHMP2AO43633 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
CHMP2AO43633 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CHMP2AO43633 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CHMP2AO43633 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CHMP2AO43633 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.32■□□□□ 0.84
CHMP2AO43633 AC091607.1-201ENST00000490318 1060 ntBASIC20.32■□□□□ 0.84
CHMP2AO43633 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.32■□□□□ 0.84
CHMP2AO43633 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP2AO43633 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP2AO43633 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CHMP2AO43633 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CHMP2AO43633 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CHMP2AO43633 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP2AO43633 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
CHMP2AO43633 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP2AO43633 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CHMP2AO43633 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP2AO43633 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 AL845331.1-201ENST00000424978 1190 ntBASIC20.31■□□□□ 0.84
CHMP2AO43633 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CHMP2AO43633 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP2AO43633 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 REXO1L9P-201ENST00000604264 2108 ntBASIC20.31■□□□□ 0.84
CHMP2AO43633 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP2AO43633 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP2AO43633 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP2AO43633 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP2AO43633 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP2AO43633 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP2AO43633 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.3■□□□□ 0.84
CHMP2AO43633 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CHMP2AO43633 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms