Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 AC011467.2-201ENST00000598425 242 ntBASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.35■□□□□ 0.69
SMIM28A0A1B0GU29 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 INTS4P1-201ENST00000438455 1935 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 FDX1P1-201ENST00000449115 551 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 AC132008.2-207ENST00000454517 770 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 SAPCD2P3-201ENST00000455031 850 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 AF238378.1-201ENST00000526806 358 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 AL160237.2-201ENST00000556165 472 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 AC090164.3-201ENST00000610780 2143 ntBASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.34■□□□□ 0.69
SMIM28A0A1B0GU29 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SMIM28A0A1B0GU29 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 AL121912.1-201ENST00000603683 238 ntBASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 KRT8P10-201ENST00000450021 1447 ntBASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.33■□□□□ 0.68
SMIM28A0A1B0GU29 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 AC104581.1-202ENST00000635932 2618 ntBASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SMIM28A0A1B0GU29 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms