Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 AC004832.2-201ENST00000426397 482 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 KRT18P65-201ENST00000439811 1286 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 AC004967.1-201ENST00000453589 447 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 AC012640.2-201ENST00000561606 901 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 AL355385.1-201ENST00000606123 409 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 AL024508.2-201ENST00000607749 1894 ntBASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 AC112482.1-201ENST00000492080 688 ntBASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHGA1Q9Y5H4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 LAGE3P1-201ENST00000425356 484 ntBASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 AC002347.1-201ENST00000569543 541 ntBASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 SDHAP2-201ENST00000455183 2001 ntBASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDHGA1Q9Y5H4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHGA1Q9Y5H4 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHGA1Q9Y5H4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHGA1Q9Y5H4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
PCDHGA1Q9Y5H4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDHGA1Q9Y5H4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
PCDHGA1Q9Y5H4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms