Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.45■□□□□ 0.7
SIX2Q9NPC8 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SIX2Q9NPC8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SIX2Q9NPC8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SIX2Q9NPC8 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 KRT89P-201ENST00000620027 1478 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 BX664615.1-201ENST00000443558 458 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 KRT18P57-201ENST00000443599 1254 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 KRT18P38-201ENST00000449496 1282 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 AC008687.5-201ENST00000593746 558 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 AC006011.2-201ENST00000621313 1158 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 AL031432.5-201ENST00000641059 760 ntBASIC19.44■□□□□ 0.7
SIX2Q9NPC8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.44■□□□□ 0.7
SIX2Q9NPC8 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SIX2Q9NPC8 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SIX2Q9NPC8 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 PP12613-201ENST00000424958 2230 ntBASIC19.41■□□□□ 0.7
SIX2Q9NPC8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms