Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC42Q96M95 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CCDC42Q96M95 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 PP12613-201ENST00000424958 2230 ntBASIC19.56■□□□□ 0.72
CCDC42Q96M95 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 AC108860.2-201ENST00000562760 2183 ntBASIC19.56■□□□□ 0.72
CCDC42Q96M95 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC42Q96M95 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC42Q96M95 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 FAM201B-201ENST00000458407 597 ntBASIC19.55■□□□□ 0.72
CCDC42Q96M95 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC42Q96M95 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC42Q96M95 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 AC009065.1-201ENST00000564055 1225 ntBASIC19.54■□□□□ 0.72
CCDC42Q96M95 AP001412.1-201ENST00000608405 714 ntBASIC19.54■□□□□ 0.72
CCDC42Q96M95 REXO1L10P-201ENST00000615707 1290 ntBASIC19.54■□□□□ 0.72
CCDC42Q96M95 REXO1L12P-201ENST00000622156 912 ntBASIC19.54■□□□□ 0.72
CCDC42Q96M95 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC42Q96M95 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CCDC42Q96M95 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 AC141586.5-201ENST00000624546 2050 ntBASIC19.53■□□□□ 0.72
CCDC42Q96M95 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC42Q96M95 ABHD17AP1-201ENST00000358206 933 ntBASIC19.53■□□□□ 0.72
CCDC42Q96M95 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC42Q96M95 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms