Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHFRQ96EP1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHFRQ96EP1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHFRQ96EP1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 RPS2P1-201ENST00000434010 821 ntBASIC18.4■□□□□ 0.54
CHFRQ96EP1 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 AC025062.2-201ENST00000605477 670 ntBASIC18.4■□□□□ 0.54
CHFRQ96EP1 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHFRQ96EP1 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHFRQ96EP1 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.4■□□□□ 0.54
CHFRQ96EP1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHFRQ96EP1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CHFRQ96EP1 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.39■□□□□ 0.54
CHFRQ96EP1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 PGAM5P1-201ENST00000518923 814 ntBASIC18.39■□□□□ 0.53
CHFRQ96EP1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHFRQ96EP1 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.39■□□□□ 0.53
CHFRQ96EP1 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 AC132938.6-201ENST00000623828 1655 ntBASIC18.38■□□□□ 0.53
CHFRQ96EP1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 AC112698.1-201ENST00000510299 916 ntBASIC18.38■□□□□ 0.53
CHFRQ96EP1 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 AC145285.3-201ENST00000564603 959 ntBASIC18.38■□□□□ 0.53
CHFRQ96EP1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CHFRQ96EP1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHFRQ96EP1 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.37■□□□□ 0.53
CHFRQ96EP1 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CHFRQ96EP1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.37■□□□□ 0.53
CHFRQ96EP1 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.37■□□□□ 0.53
CHFRQ96EP1 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.37■□□□□ 0.53
CHFRQ96EP1 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.37■□□□□ 0.53
CHFRQ96EP1 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 ANO7L1-203ENST00000602586 1720 ntBASIC18.37■□□□□ 0.53
CHFRQ96EP1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHFRQ96EP1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 PMS2P7-201ENST00000506558 1336 ntBASIC18.36■□□□□ 0.53
CHFRQ96EP1 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 AC092865.5-201ENST00000545435 363 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms