Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 AC010240.3-201ENST00000607688 395 ntBASIC5.61□□□□□ -1.51
SYNE1Q8NF91 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SYNE1Q8NF91 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AL031284.1-201ENST00000419297 478 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MPI-205ENST00000562606 1052 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AL662844.1-201ENST00000546340 181 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 KLK8-205ENST00000593490 267 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 GOLGA2P11-201ENST00000562660 1621 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AL049812.1-201ENST00000432563 2267 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HLA-F-220ENST00000434407 884 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AC138894.3-201ENST00000603787 634 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 AL353801.3-201ENST00000609898 542 ntBASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC5.6□□□□□ -1.51
SYNE1Q8NF91 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms