Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ZNF540Q8NDQ6 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 FER1L4-210ENST00000615531 5998 ntBASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 AC004264.1-201ENST00000608354 794 ntBASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.81■□□□□ 0.28
ZNF540Q8NDQ6 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 KRT16P5-201ENST00000455284 522 ntBASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 AL160286.2-201ENST00000567150 934 ntBASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 LINC01023-201ENST00000606054 436 ntBASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.8■□□□□ 0.28
ZNF540Q8NDQ6 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms