Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 AC140113.2-201ENST00000604370 208 ntBASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 AP002414.3-201ENST00000589352 1468 ntBASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USHBP1Q8N6Y0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 RPS2P28-201ENST00000314255 741 ntBASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 CD63-204ENST00000546939 779 ntTSL 3 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 AC145285.3-201ENST00000564603 959 ntBASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC23.79■■□□□ 1.4
USHBP1Q8N6Y0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 GMCL1P1-201ENST00000463439 1581 ntBASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 HLA-J-201ENST00000462773 1622 ntBASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 COX10-202ENST00000429152 875 ntTSL 2 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 MTDHP4-201ENST00000600287 670 ntBASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 AL356488.2-201ENST00000602755 427 ntBASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USHBP1Q8N6Y0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 BX005266.1-201ENST00000473402 457 ntBASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 RNA5SP415-201ENST00000517246 115 ntBASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 AC004817.3-201ENST00000602957 2129 ntBASIC23.77■■□□□ 1.4
USHBP1Q8N6Y0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms