Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 RN7SL606P-201ENST00000472779 293 ntBASIC16.76■□□□□ 0.27
RNF4P78317 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
RNF4P78317 MIR3180-1-201ENST00000580374 94 ntBASIC16.76■□□□□ 0.27
RNF4P78317 MIR3180-3-201ENST00000584616 94 ntBASIC16.76■□□□□ 0.27
RNF4P78317 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.76■□□□□ 0.27
RNF4P78317 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.76■□□□□ 0.27
RNF4P78317 AC092329.2-201ENST00000598402 547 ntBASIC16.76■□□□□ 0.27
RNF4P78317 AL592071.1-201ENST00000611956 408 ntBASIC16.76■□□□□ 0.27
RNF4P78317 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.76■□□□□ 0.27
RNF4P78317 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.76■□□□□ 0.27
RNF4P78317 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
RNF4P78317 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
RNF4P78317 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RNF4P78317 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
RNF4P78317 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
RNF4P78317 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 AC093010.1-201ENST00000473625 1624 ntBASIC16.75■□□□□ 0.27
RNF4P78317 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
RNF4P78317 DRAXINP1-201ENST00000437611 948 ntBASIC16.75■□□□□ 0.27
RNF4P78317 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.75■□□□□ 0.27
RNF4P78317 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.75■□□□□ 0.27
RNF4P78317 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 TPSP2-201ENST00000561760 610 ntBASIC16.75■□□□□ 0.27
RNF4P78317 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.75■□□□□ 0.27
RNF4P78317 AC009154.2-201ENST00000621177 724 ntBASIC16.75■□□□□ 0.27
RNF4P78317 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
RNF4P78317 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RNF4P78317 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.75■□□□□ 0.27
RNF4P78317 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RNF4P78317 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
RNF4P78317 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
RNF4P78317 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.74■□□□□ 0.27
RNF4P78317 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
RNF4P78317 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
RNF4P78317 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RNF4P78317 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RNF4P78317 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 AL096828.2-201ENST00000567259 1965 ntBASIC16.73■□□□□ 0.27
RNF4P78317 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 AL020996.1-203ENST00000536896 2307 ntBASIC16.73■□□□□ 0.27
RNF4P78317 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF4P78317 AC132938.6-201ENST00000623828 1655 ntBASIC16.73■□□□□ 0.27
RNF4P78317 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
RNF4P78317 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
RNF4P78317 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF4P78317 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms