Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RPL39P62891 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RPL39P62891 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
RPL39P62891 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RPL39P62891 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC12.85□□□□□ -0.35
RPL39P62891 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RPL39P62891 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RPL39P62891 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
RPL39P62891 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC12.84□□□□□ -0.35
RPL39P62891 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 PTPA-216ENST00000432651 857 ntTSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 UNC93B4-201ENST00000505679 747 ntBASIC12.84□□□□□ -0.35
RPL39P62891 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC12.84□□□□□ -0.35
RPL39P62891 AC098934.4-201ENST00000564127 592 ntBASIC12.84□□□□□ -0.35
RPL39P62891 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC12.84□□□□□ -0.35
RPL39P62891 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
RPL39P62891 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
RPL39P62891 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC12.84□□□□□ -0.35
RPL39P62891 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
RPL39P62891 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
RPL39P62891 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
RPL39P62891 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
RPL39P62891 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
RPL39P62891 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
RPL39P62891 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RPL39P62891 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC12.83□□□□□ -0.36
RPL39P62891 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
RPL39P62891 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 DERL1-203ENST00000419562 918 ntTSL 2 BASIC12.83□□□□□ -0.36
RPL39P62891 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC12.83□□□□□ -0.36
RPL39P62891 TSPY6P-201ENST00000448518 926 ntBASIC12.83□□□□□ -0.36
RPL39P62891 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC12.83□□□□□ -0.36
RPL39P62891 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC12.83□□□□□ -0.36
RPL39P62891 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
RPL39P62891 MIR5787-201ENST00000611784 55 ntBASIC12.83□□□□□ -0.36
RPL39P62891 PFKL-212ENST00000628044 129 ntTSL 3 BASIC12.83□□□□□ -0.36
RPL39P62891 LINC00602-201ENST00000629776 2065 ntBASIC12.83□□□□□ -0.36
RPL39P62891 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
RPL39P62891 SP100-208ENST00000427101 1922 ntTSL 2 BASIC12.83□□□□□ -0.36
RPL39P62891 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
RPL39P62891 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
RPL39P62891 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms