Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
HOXD3P31249 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD3P31249 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 AC073592.3-201ENST00000625118 1834 ntBASIC14.01□□□□□ -0.17
HOXD3P31249 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
HOXD3P31249 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 KRT89P-201ENST00000620027 1478 ntBASIC14.01□□□□□ -0.17
HOXD3P31249 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.01□□□□□ -0.17
HOXD3P31249 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXD3P31249 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.01□□□□□ -0.17
HOXD3P31249 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 AL121772.3-201ENST00000610840 674 ntBASIC14.01□□□□□ -0.17
HOXD3P31249 AL031008.1-201ENST00000619963 541 ntBASIC14.01□□□□□ -0.17
HOXD3P31249 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.01□□□□□ -0.17
HOXD3P31249 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
HOXD3P31249 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.01□□□□□ -0.17
HOXD3P31249 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 AL024508.2-201ENST00000607749 1894 ntBASIC14□□□□□ -0.17
HOXD3P31249 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14□□□□□ -0.17
HOXD3P31249 TSPY19P-201ENST00000418461 509 ntBASIC14□□□□□ -0.17
HOXD3P31249 TSPY18P-201ENST00000441642 509 ntBASIC14□□□□□ -0.17
HOXD3P31249 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14□□□□□ -0.17
HOXD3P31249 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14□□□□□ -0.17
HOXD3P31249 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 AC005332.3-201ENST00000589904 676 ntBASIC14□□□□□ -0.17
HOXD3P31249 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 IGHV3-41-201ENST00000613121 348 ntBASIC14□□□□□ -0.17
HOXD3P31249 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC14□□□□□ -0.17
HOXD3P31249 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
HOXD3P31249 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14□□□□□ -0.17
HOXD3P31249 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms