Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 METTL26-203ENST00000397664 604 ntTSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CYP2T1P-201ENST00000432607 1285 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 UQCRFS1P1-201ENST00000435169 820 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AC068587.9-201ENST00000641814 219 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AC124283.5-201ENST00000624661 1809 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.66□□□□□ -0.22
HLA-DQA1P01909 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 YBX1P10-201ENST00000444752 975 ntBASIC13.65□□□□□ -0.22
HLA-DQA1P01909 AC007322.4-201ENST00000509611 723 ntBASIC13.65□□□□□ -0.22
HLA-DQA1P01909 DUX4L16-201ENST00000555130 1264 ntBASIC13.65□□□□□ -0.22
HLA-DQA1P01909 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 AC080038.1-201ENST00000611274 1154 ntBASIC13.65□□□□□ -0.22
HLA-DQA1P01909 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.65□□□□□ -0.22
HLA-DQA1P01909 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
HLA-DQA1P01909 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
HLA-DQA1P01909 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms