Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
LMX1BO60663 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
LMX1BO60663 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
LMX1BO60663 AC036111.1-201ENST00000533973 1582 ntBASIC15.96■□□□□ 0.14
LMX1BO60663 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
LMX1BO60663 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
LMX1BO60663 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC15.95■□□□□ 0.14
LMX1BO60663 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 PCED1CP-201ENST00000419887 785 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 KRT18P48-201ENST00000434763 852 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 AC009947.2-201ENST00000444014 672 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 HOMER2P1-201ENST00000455653 964 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1BO60663 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.95■□□□□ 0.14
LMX1BO60663 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1BO60663 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1BO60663 AC140113.3-201ENST00000605663 199 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 AC011558.1-201ENST00000623459 338 ntBASIC15.95■□□□□ 0.14
LMX1BO60663 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 FST-202ENST00000396947 2538 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1BO60663 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1BO60663 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1BO60663 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 AC092338.2-201ENST00000568827 1415 ntBASIC15.94■□□□□ 0.14
LMX1BO60663 AC034236.2-201ENST00000606662 1610 ntBASIC15.94■□□□□ 0.14
LMX1BO60663 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
LMX1BO60663 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
LMX1BO60663 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.94■□□□□ 0.14
LMX1BO60663 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.94■□□□□ 0.14
LMX1BO60663 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.94■□□□□ 0.14
LMX1BO60663 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 GMCL1P1-201ENST00000463439 1581 ntBASIC15.94■□□□□ 0.14
LMX1BO60663 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC15.94■□□□□ 0.14
LMX1BO60663 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC15.94■□□□□ 0.14
LMX1BO60663 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LMX1BO60663 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
LMX1BO60663 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 GNAS-203ENST00000306120 1878 ntBASIC15.93■□□□□ 0.14
LMX1BO60663 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.93■□□□□ 0.14
LMX1BO60663 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LMX1BO60663 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms