Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88BA6NC98 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
CCDC88BA6NC98 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 COX5A-206ENST00000568783 571 ntTSL 3 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 MCCD1P2-201ENST00000423228 335 ntBASIC31.21■■■□□ 2.59
CCDC88BA6NC98 MIR3687-2-201ENST00000577708 61 ntBASIC31.21■■■□□ 2.59
CCDC88BA6NC98 MIR3687-1-201ENST00000614492 61 ntBASIC31.21■■■□□ 2.59
CCDC88BA6NC98 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88BA6NC98 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC31.2■■■□□ 2.59
CCDC88BA6NC98 AL353593.2-201ENST00000602529 1483 ntBASIC31.2■■■□□ 2.59
CCDC88BA6NC98 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC31.2■■■□□ 2.59
CCDC88BA6NC98 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
CCDC88BA6NC98 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC31.2■■■□□ 2.58
CCDC88BA6NC98 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC31.2■■■□□ 2.58
CCDC88BA6NC98 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC31.2■■■□□ 2.58
CCDC88BA6NC98 MIR1199-201ENST00000621445 119 ntBASIC31.2■■■□□ 2.58
CCDC88BA6NC98 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC31.2■■■□□ 2.58
CCDC88BA6NC98 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 TBC1D3P5-201ENST00000579401 1545 ntBASIC31.19■■■□□ 2.58
CCDC88BA6NC98 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88BA6NC98 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 CIPC-205ENST00000555437 566 ntTSL 3 BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 PGM5P2-202ENST00000637225 1043 ntBASIC31.18■■■□□ 2.58
CCDC88BA6NC98 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88BA6NC98 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 AC004706.3-202ENST00000621574 984 ntBASIC31.17■■■□□ 2.58
CCDC88BA6NC98 AC073592.5-201ENST00000624854 528 ntBASIC31.17■■■□□ 2.58
CCDC88BA6NC98 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88BA6NC98 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms