Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 MIR1238-201ENST00000408483 83 ntBASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 AC073912.3-201ENST00000624414 853 ntBASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 KRT8P9-201ENST00000558927 1449 ntBASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
TRIM56Q9BRZ2 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 AP000593.1-201ENST00000393668 712 ntBASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 AL353719.1-201ENST00000566847 864 ntBASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 AC092338.2-201ENST00000568827 1415 ntBASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 AL163051.1-201ENST00000569214 1512 ntBASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM56Q9BRZ2 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 GMCL1P1-201ENST00000463439 1581 ntBASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 FITM1-202ENST00000559294 800 ntBASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM56Q9BRZ2 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM56Q9BRZ2 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms