Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 MIR149-201ENST00000384879 89 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 TSPY19P-201ENST00000418461 509 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 TSPY18P-201ENST00000441642 509 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 RN7SL606P-201ENST00000472779 293 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 AC104819.1-201ENST00000504587 486 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 FOSL1P1-201ENST00000511041 816 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 AL732292.2-201ENST00000609649 430 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 AC233702.3-201ENST00000578656 1387 ntBASIC21.05■□□□□ 0.96
TRERF1Q96PN7 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRERF1Q96PN7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AC074051.2-201ENST00000565115 352 ntBASIC21.04■□□□□ 0.96
TRERF1Q96PN7 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 AC090340.1-201ENST00000620778 4980 ntBASIC21.04■□□□□ 0.96
TRERF1Q96PN7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.04■□□□□ 0.96
TRERF1Q96PN7 LINC00167-201ENST00000530583 1419 ntBASIC21.04■□□□□ 0.96
TRERF1Q96PN7 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 IFNL4P1-201ENST00000607083 540 ntBASIC21.03■□□□□ 0.96
TRERF1Q96PN7 AL121772.3-201ENST00000610840 674 ntBASIC21.03■□□□□ 0.96
TRERF1Q96PN7 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
TRERF1Q96PN7 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms