Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 TSPY22P-201ENST00000427496 604 ntBASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 KRT126P-201ENST00000549467 1181 ntBASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 CLEC4GP1-201ENST00000596555 870 ntBASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP3Q96DZ5 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 AP000974.1-201ENST00000623909 2387 ntBASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 AC016734.2-201ENST00000624325 1377 ntBASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP3Q96DZ5 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AP003733.1-201ENST00000491725 852 ntBASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP3Q96DZ5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 NPAP1P7-201ENST00000613027 823 ntBASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 MTMR9LP-203ENST00000426597 1545 ntBASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CLIP3Q96DZ5 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 AL391005.1-201ENST00000623953 2435 ntBASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 CHCHD2P8-201ENST00000429873 447 ntBASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.49■□□□□ 0.39
CLIP3Q96DZ5 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms