Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 HOXB1-202ENST00000577092 1414 ntBASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.46■□□□□ 0.39
CLHC1Q8NHS4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLHC1Q8NHS4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLHC1Q8NHS4 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLHC1Q8NHS4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLHC1Q8NHS4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 AC007663.1-201ENST00000438948 1240 ntBASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 CCR12P-201ENST00000446203 998 ntBASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 TMEM191A-211ENST00000637163 1067 ntBASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 LINC01126-201ENST00000623515 1646 ntBASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLHC1Q8NHS4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 INGX-201ENST00000359239 846 ntBASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 TSPY15P-201ENST00000457163 923 ntBASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 BX088651.1-201ENST00000540551 451 ntBASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 AC116562.4-202ENST00000641738 218 ntBASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.44■□□□□ 0.38
CLHC1Q8NHS4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 WWOX-216ENST00000569818 525 ntBASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLHC1Q8NHS4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms