Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VRK3Q8IV63 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VRK3Q8IV63 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 AC005332.3-201ENST00000589904 676 ntBASIC17.74■□□□□ 0.43
VRK3Q8IV63 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 AL121956.5-201ENST00000625261 221 ntBASIC17.74■□□□□ 0.43
VRK3Q8IV63 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.74■□□□□ 0.43
VRK3Q8IV63 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VRK3Q8IV63 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 AC005332.1-201ENST00000577698 1310 ntBASIC17.73■□□□□ 0.43
VRK3Q8IV63 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 AC008687.5-201ENST00000593746 558 ntBASIC17.73■□□□□ 0.43
VRK3Q8IV63 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 AL133373.2-201ENST00000623187 2828 ntBASIC17.73■□□□□ 0.43
VRK3Q8IV63 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VRK3Q8IV63 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VRK3Q8IV63 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 Z83836.1-201ENST00000624605 1642 ntBASIC17.72■□□□□ 0.43
VRK3Q8IV63 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VRK3Q8IV63 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.72■□□□□ 0.43
VRK3Q8IV63 AL390719.2-201ENST00000606993 987 ntBASIC17.72■□□□□ 0.43
VRK3Q8IV63 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms