Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 AC132938.6-201ENST00000623828 1655 ntBASIC19.61■□□□□ 0.73
KRT39Q6A163 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
KRT39Q6A163 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
KRT39Q6A163 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 AP000997.3-201ENST00000623333 2250 ntBASIC19.6■□□□□ 0.73
KRT39Q6A163 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 LINC01311-201ENST00000565162 1445 ntBASIC19.6■□□□□ 0.73
KRT39Q6A163 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 MIR662-201ENST00000384847 95 ntBASIC19.6■□□□□ 0.73
KRT39Q6A163 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.6■□□□□ 0.73
KRT39Q6A163 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.6■□□□□ 0.73
KRT39Q6A163 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.6■□□□□ 0.73
KRT39Q6A163 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
KRT39Q6A163 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 AC018470.1-201ENST00000624790 3129 ntBASIC19.6■□□□□ 0.73
KRT39Q6A163 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
KRT39Q6A163 LINC00167-201ENST00000530583 1419 ntBASIC19.59■□□□□ 0.73
KRT39Q6A163 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.59■□□□□ 0.73
KRT39Q6A163 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.59■□□□□ 0.73
KRT39Q6A163 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 DUTP2-201ENST00000519164 463 ntBASIC19.59■□□□□ 0.73
KRT39Q6A163 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.59■□□□□ 0.73
KRT39Q6A163 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
KRT39Q6A163 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.59■□□□□ 0.73
KRT39Q6A163 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.59■□□□□ 0.73
KRT39Q6A163 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
KRT39Q6A163 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
KRT39Q6A163 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.59■□□□□ 0.73
KRT39Q6A163 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
KRT39Q6A163 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
KRT39Q6A163 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
KRT39Q6A163 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 LINC00602-201ENST00000629776 2065 ntBASIC19.58■□□□□ 0.73
KRT39Q6A163 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.58■□□□□ 0.73
KRT39Q6A163 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.58■□□□□ 0.73
KRT39Q6A163 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
KRT39Q6A163 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.58■□□□□ 0.72
KRT39Q6A163 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.58■□□□□ 0.72
KRT39Q6A163 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.58■□□□□ 0.72
KRT39Q6A163 ZNF444P1-201ENST00000559497 298 ntBASIC19.58■□□□□ 0.72
KRT39Q6A163 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
KRT39Q6A163 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
KRT39Q6A163 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
KRT39Q6A163 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms