Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS53Q5VIR6 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 AC018470.1-201ENST00000624790 3129 ntBASIC21.91■■□□□ 1.1
VPS53Q5VIR6 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.91■■□□□ 1.1
VPS53Q5VIR6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 LINC01238-205ENST00000567549 1107 ntBASIC21.9■■□□□ 1.1
VPS53Q5VIR6 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC21.9■■□□□ 1.1
VPS53Q5VIR6 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
VPS53Q5VIR6 AL133373.2-201ENST00000623187 2828 ntBASIC21.89■■□□□ 1.1
VPS53Q5VIR6 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS53Q5VIR6 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
VPS53Q5VIR6 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.89■■□□□ 1.1
VPS53Q5VIR6 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.89■■□□□ 1.1
VPS53Q5VIR6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 AC087388.1-201ENST00000571370 1112 ntBASIC21.89■■□□□ 1.09
VPS53Q5VIR6 HTR7P1-202ENST00000624664 4411 ntBASIC21.89■■□□□ 1.09
VPS53Q5VIR6 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
VPS53Q5VIR6 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms