Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CCDC88AQ3V6T2 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 ETFA-208ENST00000559602 792 ntTSL 3 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC22.11■■□□□ 1.13
CCDC88AQ3V6T2 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AC079776.2-201ENST00000641154 1609 ntBASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AC073621.1-201ENST00000392730 636 ntBASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AL645939.2-201ENST00000427340 991 ntBASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AL163051.1-201ENST00000569214 1512 ntBASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.1■■□□□ 1.13
CCDC88AQ3V6T2 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 TSEN15P1-201ENST00000423257 515 ntBASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 CNN2P11-201ENST00000429351 262 ntBASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 COX5A-206ENST00000568783 571 ntTSL 3 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 WDR53-203ENST00000429115 683 ntTSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CCDC88AQ3V6T2 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 LAGE3P1-201ENST00000425356 484 ntBASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 AC068472.1-201ENST00000474589 881 ntBASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 AC005829.1-201ENST00000570002 483 ntBASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.08■■□□□ 1.13
CCDC88AQ3V6T2 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC88AQ3V6T2 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.12
CCDC88AQ3V6T2 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
CCDC88AQ3V6T2 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.08■■□□□ 1.12
CCDC88AQ3V6T2 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC22.08■■□□□ 1.12
CCDC88AQ3V6T2 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 AC125634.1-201ENST00000438758 1403 ntBASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 YBX1P5-201ENST00000509441 847 ntBASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC88AQ3V6T2 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC22.07■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms