Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 AC009533.2-201ENST00000543664 586 ntBASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SHROOM1Q2M3G4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.11■□□□□ 0.97
SHROOM1Q2M3G4 PAN3-AS1-201ENST00000563843 1351 ntBASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 GMCL1P1-201ENST00000463439 1581 ntBASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 PHGDH-209ENST00000641074 1780 ntBASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 AF186996.4-201ENST00000467186 377 ntBASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 AC021087.4-201ENST00000563761 564 ntBASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 AP005117.1-201ENST00000584346 1413 ntBASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM1Q2M3G4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC21.09■□□□□ 0.97
SHROOM1Q2M3G4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms