Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TFAMP1-201ENST00000412727 736 ntBASIC11.17□□□□□ -0.62
HSPG2P98160 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 HILS1-202ENST00000545329 423 ntBASIC11.17□□□□□ -0.62
HSPG2P98160 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC11.17□□□□□ -0.62
HSPG2P98160 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC11.17□□□□□ -0.62
HSPG2P98160 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
HSPG2P98160 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC11.17□□□□□ -0.62
HSPG2P98160 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC11.17□□□□□ -0.62
HSPG2P98160 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC11.17□□□□□ -0.62
HSPG2P98160 ATP5G2P4-201ENST00000442175 420 ntBASIC11.17□□□□□ -0.62
HSPG2P98160 MIR4751-201ENST00000578027 74 ntBASIC11.17□□□□□ -0.62
HSPG2P98160 AL359881.2-201ENST00000602973 570 ntBASIC11.17□□□□□ -0.62
HSPG2P98160 AC010654.1-201ENST00000615722 808 ntBASIC11.17□□□□□ -0.62
HSPG2P98160 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
HSPG2P98160 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
HSPG2P98160 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC11.17□□□□□ -0.62
HSPG2P98160 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC11.17□□□□□ -0.62
HSPG2P98160 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC11.16□□□□□ -0.62
HSPG2P98160 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 SERBP1P5-201ENST00000510079 1181 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC11.16□□□□□ -0.62
HSPG2P98160 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 AC010336.2-201ENST00000564226 506 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
HSPG2P98160 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
HSPG2P98160 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC11.16□□□□□ -0.62
HSPG2P98160 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC11.16□□□□□ -0.62
HSPG2P98160 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 SDHAP2-201ENST00000455183 2001 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC11.16□□□□□ -0.62
HSPG2P98160 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 AC055876.3-201ENST00000431496 288 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC11.16□□□□□ -0.62
HSPG2P98160 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC11.16□□□□□ -0.62
HSPG2P98160 AC138649.4-201ENST00000612222 287 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 AC116407.2-201ENST00000613639 860 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 USP39-204ENST00000409766 2033 ntTSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 LINC00602-201ENST00000629776 2065 ntBASIC11.16□□□□□ -0.62
HSPG2P98160 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC11.16□□□□□ -0.62
HSPG2P98160 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC11.16□□□□□ -0.62
HSPG2P98160 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC11.16□□□□□ -0.62
HSPG2P98160 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
HSPG2P98160 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
HSPG2P98160 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
HSPG2P98160 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC11.15□□□□□ -0.62
HSPG2P98160 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
HSPG2P98160 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
HSPG2P98160 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC11.15□□□□□ -0.62
HSPG2P98160 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC11.15□□□□□ -0.62
HSPG2P98160 PGM5P2-202ENST00000637225 1043 ntBASIC11.15□□□□□ -0.62
HSPG2P98160 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
HSPG2P98160 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC11.15□□□□□ -0.62
HSPG2P98160 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
HSPG2P98160 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC11.15□□□□□ -0.62
HSPG2P98160 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC11.15□□□□□ -0.62
HSPG2P98160 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC11.15□□□□□ -0.62
HSPG2P98160 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC11.15□□□□□ -0.62
HSPG2P98160 SRP19-202ENST00000445150 833 ntTSL 2 BASIC11.15□□□□□ -0.62
HSPG2P98160 RNA5SP421-201ENST00000516864 134 ntBASIC11.15□□□□□ -0.62
HSPG2P98160 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC11.15□□□□□ -0.62
HSPG2P98160 LINC02560-201ENST00000596379 459 ntBASIC11.15□□□□□ -0.62
HSPG2P98160 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
HSPG2P98160 CRB3P1-201ENST00000449338 276 ntBASIC11.15□□□□□ -0.62
HSPG2P98160 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC11.15□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms