Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
RNF4P78317 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
RNF4P78317 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
RNF4P78317 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF4P78317 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF4P78317 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
RNF4P78317 TSPY12P-201ENST00000421279 868 ntBASIC16.78■□□□□ 0.28
RNF4P78317 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF4P78317 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF4P78317 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.78■□□□□ 0.28
RNF4P78317 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF4P78317 AP002414.4-201ENST00000589764 1148 ntBASIC16.78■□□□□ 0.28
RNF4P78317 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.78■□□□□ 0.28
RNF4P78317 AC092119.3-201ENST00000612618 583 ntBASIC16.78■□□□□ 0.28
RNF4P78317 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.78■□□□□ 0.28
RNF4P78317 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RNF4P78317 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
RNF4P78317 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 LINC00167-201ENST00000530583 1419 ntBASIC16.78■□□□□ 0.28
RNF4P78317 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
RNF4P78317 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.77■□□□□ 0.28
RNF4P78317 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
RNF4P78317 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 AC009113.1-201ENST00000570267 2443 ntBASIC16.77■□□□□ 0.28
RNF4P78317 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
RNF4P78317 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
RNF4P78317 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
RNF4P78317 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 HCG4P8-203ENST00000443049 980 ntBASIC16.77■□□□□ 0.28
RNF4P78317 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
RNF4P78317 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
RNF4P78317 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.77■□□□□ 0.28
RNF4P78317 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.77■□□□□ 0.28
RNF4P78317 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.77■□□□□ 0.28
RNF4P78317 AC124864.1-201ENST00000623408 392 ntBASIC16.77■□□□□ 0.28
RNF4P78317 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.77■□□□□ 0.28
RNF4P78317 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.77■□□□□ 0.28
RNF4P78317 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.77■□□□□ 0.28
RNF4P78317 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
RNF4P78317 AC093677.2-201ENST00000600169 1863 ntBASIC16.77■□□□□ 0.27
RNF4P78317 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RNF4P78317 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RNF4P78317 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
RNF4P78317 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
RNF4P78317 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RNF4P78317 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
RNF4P78317 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.77■□□□□ 0.27
RNF4P78317 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.76■□□□□ 0.27
RNF4P78317 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
RNF4P78317 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 AC135776.1-201ENST00000319817 2481 ntBASIC16.76■□□□□ 0.27
RNF4P78317 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.76■□□□□ 0.27
RNF4P78317 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.76■□□□□ 0.27
RNF4P78317 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
RNF4P78317 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
RNF4P78317 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms