Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL4A4P53420 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL4A4P53420 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.33■□□□□ 0.68
COL4A4P53420 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL4A4P53420 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
COL4A4P53420 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.33■□□□□ 0.68
COL4A4P53420 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.33■□□□□ 0.68
COL4A4P53420 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.33■□□□□ 0.68
COL4A4P53420 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL4A4P53420 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL4A4P53420 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
COL4A4P53420 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A4P53420 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.32■□□□□ 0.68
COL4A4P53420 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A4P53420 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A4P53420 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A4P53420 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A4P53420 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.32■□□□□ 0.68
COL4A4P53420 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A4P53420 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL4A4P53420 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A4P53420 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.32■□□□□ 0.68
COL4A4P53420 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A4P53420 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A4P53420 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.31■□□□□ 0.68
COL4A4P53420 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.31■□□□□ 0.68
COL4A4P53420 AC107918.4-202ENST00000641623 219 ntBASIC19.31■□□□□ 0.68
COL4A4P53420 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.31■□□□□ 0.68
COL4A4P53420 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL4A4P53420 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 AL138781.2-201ENST00000617896 1843 ntBASIC19.3■□□□□ 0.68
COL4A4P53420 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A4P53420 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL4A4P53420 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A4P53420 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.3■□□□□ 0.68
COL4A4P53420 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL4A4P53420 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A4P53420 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A4P53420 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A4P53420 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
COL4A4P53420 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 AC009947.1-201ENST00000444350 727 ntBASIC19.3■□□□□ 0.68
COL4A4P53420 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A4P53420 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.3■□□□□ 0.68
COL4A4P53420 MIR3197-201ENST00000582241 73 ntBASIC19.3■□□□□ 0.68
COL4A4P53420 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.3■□□□□ 0.68
COL4A4P53420 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.3■□□□□ 0.68
COL4A4P53420 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.3■□□□□ 0.68
COL4A4P53420 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL4A4P53420 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL4A4P53420 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.29■□□□□ 0.68
COL4A4P53420 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A4P53420 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A4P53420 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
COL4A4P53420 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A4P53420 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms