Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.57■□□□□ 0.4
LDLRP01130 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.57■□□□□ 0.4
LDLRP01130 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LDLRP01130 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.56■□□□□ 0.4
LDLRP01130 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.56■□□□□ 0.4
LDLRP01130 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.56■□□□□ 0.4
LDLRP01130 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.56■□□□□ 0.4
LDLRP01130 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LDLRP01130 SIRPAP1-201ENST00000448467 1770 ntBASIC17.56■□□□□ 0.4
LDLRP01130 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.56■□□□□ 0.4
LDLRP01130 INGX-201ENST00000359239 846 ntBASIC17.56■□□□□ 0.4
LDLRP01130 HMGA1P5-201ENST00000412453 271 ntBASIC17.56■□□□□ 0.4
LDLRP01130 AL450487.1-201ENST00000426799 995 ntBASIC17.56■□□□□ 0.4
LDLRP01130 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.56■□□□□ 0.4
LDLRP01130 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.56■□□□□ 0.4
LDLRP01130 AC139887.4-201ENST00000607877 719 ntBASIC17.56■□□□□ 0.4
LDLRP01130 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.56■□□□□ 0.4
LDLRP01130 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.56■□□□□ 0.4
LDLRP01130 AL445675.2-201ENST00000620291 557 ntBASIC17.56■□□□□ 0.4
LDLRP01130 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.56■□□□□ 0.4
LDLRP01130 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LDLRP01130 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.56■□□□□ 0.4
LDLRP01130 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LDLRP01130 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LDLRP01130 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.55■□□□□ 0.4
LDLRP01130 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.55■□□□□ 0.4
LDLRP01130 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.55■□□□□ 0.4
LDLRP01130 AC097488.1-201ENST00000507834 756 ntBASIC17.55■□□□□ 0.4
LDLRP01130 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.55■□□□□ 0.4
LDLRP01130 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LDLRP01130 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.55■□□□□ 0.4
LDLRP01130 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.55■□□□□ 0.4
LDLRP01130 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.55■□□□□ 0.4
LDLRP01130 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LDLRP01130 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
LDLRP01130 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.55■□□□□ 0.4
LDLRP01130 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LDLRP01130 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.55■□□□□ 0.4
LDLRP01130 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LDLRP01130 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.54■□□□□ 0.4
LDLRP01130 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LDLRP01130 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LDLRP01130 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LDLRP01130 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms