Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
PRPF40AO75400 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
PRPF40AO75400 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
PRPF40AO75400 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC21.15■□□□□ 0.98
PRPF40AO75400 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.15■□□□□ 0.98
PRPF40AO75400 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PRPF40AO75400 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF40AO75400 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF40AO75400 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF40AO75400 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
PRPF40AO75400 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.15■□□□□ 0.98
PRPF40AO75400 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PRPF40AO75400 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PRPF40AO75400 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PRPF40AO75400 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PRPF40AO75400 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
PRPF40AO75400 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
PRPF40AO75400 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.14■□□□□ 0.98
PRPF40AO75400 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PRPF40AO75400 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF40AO75400 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF40AO75400 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF40AO75400 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.14■□□□□ 0.97
PRPF40AO75400 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.14■□□□□ 0.97
PRPF40AO75400 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.14■□□□□ 0.97
PRPF40AO75400 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF40AO75400 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PRPF40AO75400 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PRPF40AO75400 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC21.14■□□□□ 0.97
PRPF40AO75400 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.13■□□□□ 0.97
PRPF40AO75400 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
PRPF40AO75400 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PRPF40AO75400 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.13■□□□□ 0.97
PRPF40AO75400 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PRPF40AO75400 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.13■□□□□ 0.97
PRPF40AO75400 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PRPF40AO75400 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.13■□□□□ 0.97
PRPF40AO75400 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PRPF40AO75400 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PRPF40AO75400 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PRPF40AO75400 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.12■□□□□ 0.97
PRPF40AO75400 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC21.12■□□□□ 0.97
PRPF40AO75400 AP001094.4-201ENST00000579008 2176 ntBASIC21.12■□□□□ 0.97
PRPF40AO75400 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PRPF40AO75400 MIR564-202ENST00000385049 94 ntBASIC21.12■□□□□ 0.97
PRPF40AO75400 CKBP1-201ENST00000565489 1086 ntBASIC21.12■□□□□ 0.97
PRPF40AO75400 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.12■□□□□ 0.97
PRPF40AO75400 AC008622.2-201ENST00000617006 1229 ntBASIC21.12■□□□□ 0.97
PRPF40AO75400 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms