Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
LMX1BO60663 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1BO60663 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1BO60663 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LMX1BO60663 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LMX1BO60663 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
LMX1BO60663 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LMX1BO60663 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
LMX1BO60663 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
LMX1BO60663 AC007663.1-201ENST00000438948 1240 ntBASIC15.98■□□□□ 0.15
LMX1BO60663 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC15.98■□□□□ 0.15
LMX1BO60663 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.98■□□□□ 0.15
LMX1BO60663 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1BO60663 AC141257.4-201ENST00000634557 245 ntBASIC15.98■□□□□ 0.15
LMX1BO60663 AC136944.6-201ENST00000634818 245 ntBASIC15.98■□□□□ 0.15
LMX1BO60663 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.98■□□□□ 0.15
LMX1BO60663 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC15.98■□□□□ 0.15
LMX1BO60663 AL031432.5-201ENST00000641059 760 ntBASIC15.98■□□□□ 0.15
LMX1BO60663 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LMX1BO60663 AL096828.2-201ENST00000567259 1965 ntBASIC15.98■□□□□ 0.15
LMX1BO60663 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LMX1BO60663 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
LMX1BO60663 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 LINC00896-202ENST00000609602 2128 ntBASIC15.97■□□□□ 0.15
LMX1BO60663 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 ANKRD20A18P-201ENST00000359341 492 ntBASIC15.97■□□□□ 0.15
LMX1BO60663 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.97■□□□□ 0.15
LMX1BO60663 TSPY17P-201ENST00000450329 467 ntBASIC15.97■□□□□ 0.15
LMX1BO60663 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 KRT126P-201ENST00000549467 1181 ntBASIC15.97■□□□□ 0.15
LMX1BO60663 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.97■□□□□ 0.15
LMX1BO60663 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1BO60663 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
LMX1BO60663 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LMX1BO60663 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
LMX1BO60663 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1BO60663 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LMX1BO60663 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1BO60663 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
LMX1BO60663 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1BO60663 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1BO60663 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1BO60663 PHGDH-209ENST00000641074 1780 ntBASIC15.96■□□□□ 0.15
LMX1BO60663 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1BO60663 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1BO60663 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.96■□□□□ 0.15
LMX1BO60663 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1BO60663 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC15.96■□□□□ 0.15
LMX1BO60663 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.96■□□□□ 0.15
LMX1BO60663 AL121956.5-201ENST00000625261 221 ntBASIC15.96■□□□□ 0.15
LMX1BO60663 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1BO60663 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LMX1BO60663 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1BO60663 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms