Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.35■□□□□ 0.85
MSH4O15457 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
MSH4O15457 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
MSH4O15457 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
MSH4O15457 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.34■□□□□ 0.85
MSH4O15457 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 CLEC4GP1-201ENST00000596555 870 ntBASIC20.34■□□□□ 0.85
MSH4O15457 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.34■□□□□ 0.85
MSH4O15457 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSH4O15457 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.34■□□□□ 0.85
MSH4O15457 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.33■□□□□ 0.85
MSH4O15457 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.33■□□□□ 0.85
MSH4O15457 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.33■□□□□ 0.85
MSH4O15457 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
MSH4O15457 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.33■□□□□ 0.85
MSH4O15457 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 DUTP2-201ENST00000519164 463 ntBASIC20.33■□□□□ 0.85
MSH4O15457 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.33■□□□□ 0.85
MSH4O15457 AC011840.4-201ENST00000578471 627 ntBASIC20.33■□□□□ 0.85
MSH4O15457 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSH4O15457 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH4O15457 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH4O15457 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.33■□□□□ 0.84
MSH4O15457 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH4O15457 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSH4O15457 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.32■□□□□ 0.84
MSH4O15457 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH4O15457 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
MSH4O15457 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
MSH4O15457 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
MSH4O15457 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 IGHV3-47-201ENST00000425060 335 ntBASIC20.32■□□□□ 0.84
MSH4O15457 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH4O15457 AC246785.2-201ENST00000432512 513 ntBASIC20.32■□□□□ 0.84
MSH4O15457 AC112698.1-201ENST00000510299 916 ntBASIC20.32■□□□□ 0.84
MSH4O15457 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH4O15457 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.32■□□□□ 0.84
MSH4O15457 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.32■□□□□ 0.84
MSH4O15457 MIR3652-201ENST00000579335 131 ntBASIC20.32■□□□□ 0.84
MSH4O15457 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
MSH4O15457 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 AC012313.10-201ENST00000623509 926 ntBASIC20.32■□□□□ 0.84
MSH4O15457 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.32■□□□□ 0.84
MSH4O15457 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
MSH4O15457 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.32■□□□□ 0.84
MSH4O15457 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH4O15457 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MSH4O15457 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH4O15457 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH4O15457 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms