Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC116407.2-201ENST00000613639 860 ntBASIC30.87■■■□□ 2.53
CUX2O14529 SNX12-206ENST00000622259 661 ntTSL 5 BASIC30.87■■■□□ 2.53
CUX2O14529 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC30.87■■■□□ 2.53
CUX2O14529 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CUX2O14529 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC30.86■■■□□ 2.53
CUX2O14529 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX2O14529 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
CUX2O14529 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX2O14529 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CUX2O14529 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC30.86■■■□□ 2.53
CUX2O14529 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC30.86■■■□□ 2.53
CUX2O14529 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC30.86■■■□□ 2.53
CUX2O14529 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC30.86■■■□□ 2.53
CUX2O14529 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC30.86■■■□□ 2.53
CUX2O14529 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC30.86■■■□□ 2.53
CUX2O14529 CIPC-205ENST00000555437 566 ntTSL 3 BASIC30.86■■■□□ 2.53
CUX2O14529 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC30.86■■■□□ 2.53
CUX2O14529 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX2O14529 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CUX2O14529 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 IRX1P1-201ENST00000438849 1838 ntBASIC30.85■■■□□ 2.53
CUX2O14529 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC30.85■■■□□ 2.53
CUX2O14529 AC003669.1-201ENST00000334569 611 ntBASIC30.85■■■□□ 2.53
CUX2O14529 VMA21-202ENST00000370361 693 ntTSL 5 BASIC30.85■■■□□ 2.53
CUX2O14529 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 SMN2-210ENST00000511812 867 ntTSL 2 BASIC30.85■■■□□ 2.53
CUX2O14529 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC30.85■■■□□ 2.53
CUX2O14529 AL589182.2-201ENST00000619332 1049 ntBASIC30.85■■■□□ 2.53
CUX2O14529 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
CUX2O14529 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CUX2O14529 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX2O14529 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX2O14529 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX2O14529 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX2O14529 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC30.84■■■□□ 2.53
CUX2O14529 ADH5P3-201ENST00000433842 1137 ntBASIC30.84■■■□□ 2.53
CUX2O14529 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC30.84■■■□□ 2.53
CUX2O14529 CNN2P2-201ENST00000443536 909 ntBASIC30.84■■■□□ 2.53
CUX2O14529 CNN2P3-201ENST00000450201 906 ntBASIC30.84■■■□□ 2.53
CUX2O14529 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC30.84■■■□□ 2.53
CUX2O14529 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC30.84■■■□□ 2.53
CUX2O14529 AL136317.3-201ENST00000618497 906 ntBASIC30.84■■■□□ 2.53
CUX2O14529 AC068587.9-201ENST00000641814 219 ntBASIC30.84■■■□□ 2.53
CUX2O14529 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
CUX2O14529 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC30.84■■■□□ 2.53
CUX2O14529 BSG-215ENST00000618006 1329 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX2O14529 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX2O14529 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX2O14529 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC30.83■■■□□ 2.53
CUX2O14529 AL596325.1-201ENST00000563991 1082 ntBASIC30.83■■■□□ 2.53
CUX2O14529 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC30.83■■■□□ 2.53
CUX2O14529 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX2O14529 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX2O14529 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
CUX2O14529 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC30.83■■■□□ 2.53
CUX2O14529 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC30.83■■■□□ 2.53
CUX2O14529 UBQLN4P1-201ENST00000461599 1801 ntBASIC30.83■■■□□ 2.53
CUX2O14529 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX2O14529 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX2O14529 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
CUX2O14529 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC30.83■■■□□ 2.53
CUX2O14529 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CUX2O14529 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC30.83■■■□□ 2.53
CUX2O14529 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC30.83■■■□□ 2.53
CUX2O14529 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CUX2O14529 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
CUX2O14529 U91328.1-201ENST00000437528 223 ntBASIC30.82■■■□□ 2.53
CUX2O14529 MTCL1P1-201ENST00000446207 792 ntBASIC30.82■■■□□ 2.53
CUX2O14529 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC30.82■■■□□ 2.53
CUX2O14529 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.53
CUX2O14529 AC004877.2-201ENST00000623941 599 ntBASIC30.82■■■□□ 2.53
CUX2O14529 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX2O14529 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX2O14529 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CUX2O14529 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC30.82■■■□□ 2.52
CUX2O14529 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC30.82■■■□□ 2.52
CUX2O14529 FEM1AP3-201ENST00000403722 1741 ntBASIC30.82■■■□□ 2.52
CUX2O14529 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC30.82■■■□□ 2.52
CUX2O14529 AL121761.2-201ENST00000598007 1648 ntBASIC30.82■■■□□ 2.52
CUX2O14529 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX2O14529 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CUX2O14529 RAC2-204ENST00000406508 893 ntTSL 5 BASIC30.82■■■□□ 2.52
CUX2O14529 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC30.82■■■□□ 2.52
CUX2O14529 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
CUX2O14529 IGHV3-65-201ENST00000523210 341 ntBASIC30.82■■■□□ 2.52
CUX2O14529 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC30.82■■■□□ 2.52
CUX2O14529 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC30.82■■■□□ 2.52
CUX2O14529 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC30.82■■■□□ 2.52
CUX2O14529 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CUX2O14529 AC010654.1-201ENST00000615722 808 ntBASIC30.82■■■□□ 2.52
CUX2O14529 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC30.81■■■□□ 2.52
CUX2O14529 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
CUX2O14529 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CUX2O14529 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms