Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 DANCR-204ENST00000444958 709 ntTSL 3 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 RNA5SP415-201ENST00000517246 115 ntBASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 SART3-203ENST00000546611 1184 ntBASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 MYLKP1-201ENST00000509077 1580 ntBASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC34.4■■■■□ 3.1
SHROOM4Q9ULL8 RNA5SP416-201ENST00000516838 111 ntBASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 MED16-201ENST00000269814 1199 ntTSL 5 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 AC113404.2-201ENST00000507884 177 ntBASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC34.39■■■■□ 3.1
SHROOM4Q9ULL8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 LBH-203ENST00000404397 543 ntTSL 4 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
SHROOM4Q9ULL8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 RBSN-204ENST00000449050 903 ntTSL 2 BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
SHROOM4Q9ULL8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 RCN1P2-201ENST00000398357 915 ntBASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 INTS4P1-201ENST00000438455 1935 ntBASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC34.36■■■■□ 3.09
SHROOM4Q9ULL8 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 LINC01126-201ENST00000623515 1646 ntBASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 HTR5BP-201ENST00000430851 1154 ntBASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC34.35■■■■□ 3.09
SHROOM4Q9ULL8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC34.34■■■■□ 3.09
SHROOM4Q9ULL8 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
SHROOM4Q9ULL8 RPS8P6-201ENST00000426177 609 ntBASIC34.34■■■■□ 3.09
SHROOM4Q9ULL8 RPS2P1-201ENST00000434010 821 ntBASIC34.34■■■■□ 3.09
SHROOM4Q9ULL8 MEG3-211ENST00000452514 461 ntTSL 3 BASIC34.34■■■■□ 3.09
SHROOM4Q9ULL8 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC34.34■■■■□ 3.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms