Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDCA3Q99618 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDCA3Q99618 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 SIGLEC16-201ENST00000599858 1437 ntBASIC18.84■□□□□ 0.61
CDCA3Q99618 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 KRT18P28-201ENST00000453838 1332 ntBASIC18.84■□□□□ 0.61
CDCA3Q99618 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CDCA3Q99618 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 AC073621.1-201ENST00000392730 636 ntBASIC18.84■□□□□ 0.61
CDCA3Q99618 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.84■□□□□ 0.61
CDCA3Q99618 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.84■□□□□ 0.61
CDCA3Q99618 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 AC005829.1-201ENST00000570002 483 ntBASIC18.84■□□□□ 0.61
CDCA3Q99618 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.84■□□□□ 0.61
CDCA3Q99618 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.84■□□□□ 0.61
CDCA3Q99618 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
CDCA3Q99618 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDCA3Q99618 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDCA3Q99618 AL158211.5-201ENST00000623583 2518 ntBASIC18.83■□□□□ 0.61
CDCA3Q99618 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.83■□□□□ 0.61
CDCA3Q99618 AC002310.6-201ENST00000624451 1377 ntBASIC18.83■□□□□ 0.61
CDCA3Q99618 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.83■□□□□ 0.61
CDCA3Q99618 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDCA3Q99618 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDCA3Q99618 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDCA3Q99618 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 AC096633.1-201ENST00000422446 749 ntBASIC18.83■□□□□ 0.6
CDCA3Q99618 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.83■□□□□ 0.6
CDCA3Q99618 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.83■□□□□ 0.6
CDCA3Q99618 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.6
CDCA3Q99618 YBX1P5-201ENST00000509441 847 ntBASIC18.83■□□□□ 0.6
CDCA3Q99618 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
CDCA3Q99618 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.83■□□□□ 0.6
CDCA3Q99618 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.83■□□□□ 0.6
CDCA3Q99618 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.83■□□□□ 0.6
CDCA3Q99618 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 AD001527.2-201ENST00000622994 785 ntBASIC18.83■□□□□ 0.6
CDCA3Q99618 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.83■□□□□ 0.6
CDCA3Q99618 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CDCA3Q99618 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDCA3Q99618 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.83■□□□□ 0.6
CDCA3Q99618 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.82■□□□□ 0.6
CDCA3Q99618 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CDCA3Q99618 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.82■□□□□ 0.6
CDCA3Q99618 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.82■□□□□ 0.6
CDCA3Q99618 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.82■□□□□ 0.6
CDCA3Q99618 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.82■□□□□ 0.6
CDCA3Q99618 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.82■□□□□ 0.6
CDCA3Q99618 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.82■□□□□ 0.6
CDCA3Q99618 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.82■□□□□ 0.6
CDCA3Q99618 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.82■□□□□ 0.6
CDCA3Q99618 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CDCA3Q99618 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CDCA3Q99618 AC099343.3-201ENST00000605834 2503 ntBASIC18.82■□□□□ 0.6
CDCA3Q99618 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 AL161938.1-201ENST00000569833 2180 ntBASIC18.82■□□□□ 0.6
CDCA3Q99618 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDCA3Q99618 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.81■□□□□ 0.6
CDCA3Q99618 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms