Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC096734.2-201ENST00000562054 433 ntBASIC29.93■■■□□ 2.38
IFT140Q96RY7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
IFT140Q96RY7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
IFT140Q96RY7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
IFT140Q96RY7 MYLKP1-201ENST00000509077 1580 ntBASIC29.93■■■□□ 2.38
IFT140Q96RY7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
IFT140Q96RY7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 AQP6-203ENST00000551733 849 ntTSL 3 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 AC004449.1-201ENST00000564240 433 ntBASIC29.93■■■□□ 2.38
IFT140Q96RY7 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC29.93■■■□□ 2.38
IFT140Q96RY7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
IFT140Q96RY7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
IFT140Q96RY7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
IFT140Q96RY7 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
IFT140Q96RY7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
IFT140Q96RY7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 ADH5P3-201ENST00000433842 1137 ntBASIC29.92■■■□□ 2.38
IFT140Q96RY7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 SMN2-210ENST00000511812 867 ntTSL 2 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 AC069262.1-201ENST00000539058 672 ntBASIC29.92■■■□□ 2.38
IFT140Q96RY7 AC022145.2-201ENST00000598203 171 ntBASIC29.92■■■□□ 2.38
IFT140Q96RY7 AQP6-205ENST00000618286 829 ntTSL 5 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 AC073592.5-201ENST00000624854 528 ntBASIC29.92■■■□□ 2.38
IFT140Q96RY7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
IFT140Q96RY7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC29.92■■■□□ 2.38
IFT140Q96RY7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 PMS2P4-201ENST00000412466 1052 ntBASIC29.91■■■□□ 2.38
IFT140Q96RY7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
IFT140Q96RY7 AC087641.1-201ENST00000557561 1021 ntBASIC29.91■■■□□ 2.38
IFT140Q96RY7 TK1-204ENST00000590430 683 ntTSL 3 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 AC105339.1-204ENST00000636249 355 ntBASIC29.91■■■□□ 2.38
IFT140Q96RY7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC29.91■■■□□ 2.38
IFT140Q96RY7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC29.91■■■□□ 2.38
IFT140Q96RY7 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
IFT140Q96RY7 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
IFT140Q96RY7 BCAR1-209ENST00000546196 1340 ntBASIC29.9■■■□□ 2.38
IFT140Q96RY7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC29.9■■■□□ 2.38
IFT140Q96RY7 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC29.9■■■□□ 2.38
IFT140Q96RY7 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
IFT140Q96RY7 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC29.9■■■□□ 2.38
IFT140Q96RY7 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
IFT140Q96RY7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC29.9■■■□□ 2.38
IFT140Q96RY7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
IFT140Q96RY7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
IFT140Q96RY7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
IFT140Q96RY7 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
IFT140Q96RY7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC29.89■■■□□ 2.38
IFT140Q96RY7 MRPL20P1-201ENST00000400819 433 ntBASIC29.89■■■□□ 2.38
IFT140Q96RY7 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
IFT140Q96RY7 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC29.89■■■□□ 2.38
IFT140Q96RY7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC29.89■■■□□ 2.38
IFT140Q96RY7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC29.89■■■□□ 2.38
IFT140Q96RY7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC29.89■■■□□ 2.38
IFT140Q96RY7 AC148477.5-201ENST00000625164 1645 ntBASIC29.89■■■□□ 2.38
IFT140Q96RY7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
IFT140Q96RY7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
IFT140Q96RY7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
IFT140Q96RY7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC29.88■■■□□ 2.37
IFT140Q96RY7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC29.88■■■□□ 2.37
IFT140Q96RY7 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC29.88■■■□□ 2.37
IFT140Q96RY7 AC005225.4-201ENST00000557330 545 ntBASIC29.88■■■□□ 2.37
IFT140Q96RY7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC29.88■■■□□ 2.37
IFT140Q96RY7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
IFT140Q96RY7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
IFT140Q96RY7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 AL020989.1-201ENST00000422979 469 ntBASIC29.87■■■□□ 2.37
IFT140Q96RY7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 CYB561-217ENST00000582997 877 ntTSL 5 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 AC099343.3-201ENST00000605834 2503 ntBASIC29.87■■■□□ 2.37
IFT140Q96RY7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
IFT140Q96RY7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
IFT140Q96RY7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
IFT140Q96RY7 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC29.87■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms