Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CHFRQ96EP1 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHFRQ96EP1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHFRQ96EP1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHFRQ96EP1 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.47■□□□□ 0.55
CHFRQ96EP1 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CHFRQ96EP1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHFRQ96EP1 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 SCARNA2-201ENST00000458748 420 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 AC093909.1-201ENST00000504731 1122 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 AC073648.2-201ENST00000510116 352 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 POLD2P1-201ENST00000511220 997 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 SART3-203ENST00000546611 1184 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 AC116407.3-201ENST00000623905 1129 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 AC117500.6-201ENST00000624871 588 ntBASIC18.46■□□□□ 0.55
CHFRQ96EP1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHFRQ96EP1 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CHFRQ96EP1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.46■□□□□ 0.54
CHFRQ96EP1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 KRT18P58-201ENST00000527480 1120 ntBASIC18.45■□□□□ 0.54
CHFRQ96EP1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 AC021087.4-201ENST00000563761 564 ntBASIC18.45■□□□□ 0.54
CHFRQ96EP1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 AP005117.1-201ENST00000584346 1413 ntBASIC18.45■□□□□ 0.54
CHFRQ96EP1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.45■□□□□ 0.54
CHFRQ96EP1 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHFRQ96EP1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 RPL13AP23-201ENST00000480739 586 ntBASIC18.44■□□□□ 0.54
CHFRQ96EP1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CHFRQ96EP1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHFRQ96EP1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms