Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.65■□□□□ 0.9
ERCC4Q92889 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ERCC4Q92889 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
ERCC4Q92889 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ERCC4Q92889 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
ERCC4Q92889 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.64■□□□□ 0.9
ERCC4Q92889 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ERCC4Q92889 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ERCC4Q92889 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
ERCC4Q92889 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.64■□□□□ 0.89
ERCC4Q92889 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
ERCC4Q92889 GCSHP5-201ENST00000443090 522 ntBASIC20.64■□□□□ 0.89
ERCC4Q92889 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.64■□□□□ 0.89
ERCC4Q92889 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.64■□□□□ 0.89
ERCC4Q92889 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.64■□□□□ 0.89
ERCC4Q92889 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
ERCC4Q92889 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ERCC4Q92889 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ERCC4Q92889 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.64■□□□□ 0.89
ERCC4Q92889 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
ERCC4Q92889 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.63■□□□□ 0.89
ERCC4Q92889 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
ERCC4Q92889 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.63■□□□□ 0.89
ERCC4Q92889 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.63■□□□□ 0.89
ERCC4Q92889 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.63■□□□□ 0.89
ERCC4Q92889 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ERCC4Q92889 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
ERCC4Q92889 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ERCC4Q92889 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ERCC4Q92889 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 AC080080.1-201ENST00000625121 2420 ntBASIC20.62■□□□□ 0.89
ERCC4Q92889 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ERCC4Q92889 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ERCC4Q92889 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.62■□□□□ 0.89
ERCC4Q92889 Z99916.2-201ENST00000604037 246 ntBASIC20.62■□□□□ 0.89
ERCC4Q92889 DGCR10-201ENST00000609839 495 ntBASIC20.62■□□□□ 0.89
ERCC4Q92889 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ERCC4Q92889 AL049637.2-201ENST00000641778 930 ntBASIC20.62■□□□□ 0.89
ERCC4Q92889 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
ERCC4Q92889 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.62■□□□□ 0.89
ERCC4Q92889 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.62■□□□□ 0.89
ERCC4Q92889 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.62■□□□□ 0.89
ERCC4Q92889 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
ERCC4Q92889 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
ERCC4Q92889 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.62■□□□□ 0.89
ERCC4Q92889 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ERCC4Q92889 AL135905.2-201ENST00000584934 1404 ntBASIC20.61■□□□□ 0.89
ERCC4Q92889 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
ERCC4Q92889 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
ERCC4Q92889 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.61■□□□□ 0.89
ERCC4Q92889 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ERCC4Q92889 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms