Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC22.27■■□□□ 1.16
USP48Q86UV5 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 GOLGA6L5P-202ENST00000515341 1828 ntBASIC22.27■■□□□ 1.16
USP48Q86UV5 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 TLE1-202ENST00000376484 666 ntTSL 3 BASIC22.27■■□□□ 1.16
USP48Q86UV5 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 KRT18P23-201ENST00000435622 1283 ntBASIC22.27■■□□□ 1.16
USP48Q86UV5 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC22.27■■□□□ 1.16
USP48Q86UV5 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC22.27■■□□□ 1.16
USP48Q86UV5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC22.27■■□□□ 1.16
USP48Q86UV5 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 AC124864.1-201ENST00000623408 392 ntBASIC22.27■■□□□ 1.16
USP48Q86UV5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC22.27■■□□□ 1.16
USP48Q86UV5 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
USP48Q86UV5 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC22.27■■□□□ 1.16
USP48Q86UV5 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC22.27■■□□□ 1.15
USP48Q86UV5 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
USP48Q86UV5 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
USP48Q86UV5 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
USP48Q86UV5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC22.26■■□□□ 1.15
USP48Q86UV5 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
USP48Q86UV5 MIR1233-2-201ENST00000408138 82 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 MIR1233-1-201ENST00000408722 82 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 NUS1P2-201ENST00000417358 873 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 FAM197Y8-203ENST00000450145 560 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
USP48Q86UV5 KRT18P58-201ENST00000527480 1120 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
USP48Q86UV5 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC22.26■■□□□ 1.15
USP48Q86UV5 AC010240.3-201ENST00000607688 395 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 AL773604.1-201ENST00000617417 272 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
USP48Q86UV5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC22.26■■□□□ 1.15
USP48Q86UV5 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC22.26■■□□□ 1.15
USP48Q86UV5 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 AL390961.4-201ENST00000623958 2535 ntBASIC22.26■■□□□ 1.15
USP48Q86UV5 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
USP48Q86UV5 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 KRT8P3-201ENST00000519669 1449 ntBASIC22.25■■□□□ 1.15
USP48Q86UV5 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC22.25■■□□□ 1.15
USP48Q86UV5 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC22.25■■□□□ 1.15
USP48Q86UV5 POLD2P1-201ENST00000511220 997 ntBASIC22.25■■□□□ 1.15
USP48Q86UV5 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC22.25■■□□□ 1.15
USP48Q86UV5 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC22.25■■□□□ 1.15
USP48Q86UV5 CCNC-219ENST00000627680 896 ntTSL 5 BASIC22.25■■□□□ 1.15
USP48Q86UV5 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC22.25■■□□□ 1.15
USP48Q86UV5 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC22.25■■□□□ 1.15
USP48Q86UV5 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.25■■□□□ 1.15
USP48Q86UV5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
USP48Q86UV5 AC090164.3-201ENST00000610780 2143 ntBASIC22.25■■□□□ 1.15
USP48Q86UV5 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC22.25■■□□□ 1.15
USP48Q86UV5 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
USP48Q86UV5 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
USP48Q86UV5 NSUN5P1-202ENST00000421140 1535 ntBASIC22.25■■□□□ 1.15
USP48Q86UV5 NSUN5P2-203ENST00000457352 1529 ntBASIC22.25■■□□□ 1.15
USP48Q86UV5 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
USP48Q86UV5 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC22.24■■□□□ 1.15
USP48Q86UV5 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
USP48Q86UV5 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC22.24■■□□□ 1.15
USP48Q86UV5 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
USP48Q86UV5 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC22.24■■□□□ 1.15
USP48Q86UV5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP48Q86UV5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC22.24■■□□□ 1.15
USP48Q86UV5 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP48Q86UV5 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
USP48Q86UV5 AC018470.1-201ENST00000624790 3129 ntBASIC22.24■■□□□ 1.15
USP48Q86UV5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC22.23■■□□□ 1.15
USP48Q86UV5 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
USP48Q86UV5 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms