Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 AC018712.1-201ENST00000455767 687 ntBASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 AP003733.1-201ENST00000491725 852 ntBASIC17.45■□□□□ 0.38
COL28A1Q2UY09 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 SART3-203ENST00000546611 1184 ntBASIC17.45■□□□□ 0.38
COL28A1Q2UY09 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 AC027601.4-201ENST00000611259 610 ntBASIC17.45■□□□□ 0.38
COL28A1Q2UY09 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 AC134684.3-201ENST00000641758 218 ntBASIC17.45■□□□□ 0.38
COL28A1Q2UY09 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.45■□□□□ 0.38
COL28A1Q2UY09 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL28A1Q2UY09 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 MED15P5-201ENST00000423150 992 ntBASIC17.44■□□□□ 0.38
COL28A1Q2UY09 VENTXP7-201ENST00000475503 772 ntBASIC17.44■□□□□ 0.38
COL28A1Q2UY09 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 AC124864.1-201ENST00000623408 392 ntBASIC17.44■□□□□ 0.38
COL28A1Q2UY09 AC116407.3-201ENST00000623905 1129 ntBASIC17.44■□□□□ 0.38
COL28A1Q2UY09 AC112497.1-201ENST00000624824 639 ntBASIC17.44■□□□□ 0.38
COL28A1Q2UY09 FAM215A-202ENST00000632077 792 ntBASIC17.44■□□□□ 0.38
COL28A1Q2UY09 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL28A1Q2UY09 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL28A1Q2UY09 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms