Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC13.06□□□□□ -0.32
PRKDCP78527 MTMR9LP-203ENST00000426597 1545 ntBASIC13.06□□□□□ -0.32
PRKDCP78527 TP73-202ENST00000354437 2140 ntTSL 5 BASIC13.06□□□□□ -0.32
PRKDCP78527 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC13.06□□□□□ -0.32
PRKDCP78527 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.06□□□□□ -0.32
PRKDCP78527 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 NABP1-203ENST00000409510 843 ntTSL 5 BASIC13.06□□□□□ -0.32
PRKDCP78527 IGHV3-71-201ENST00000523324 359 ntBASIC13.06□□□□□ -0.32
PRKDCP78527 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
PRKDCP78527 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.06□□□□□ -0.32
PRKDCP78527 AL589182.2-201ENST00000619332 1049 ntBASIC13.06□□□□□ -0.32
PRKDCP78527 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
PRKDCP78527 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC13.05□□□□□ -0.32
PRKDCP78527 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC13.05□□□□□ -0.32
PRKDCP78527 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
PRKDCP78527 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 PRYP5-201ENST00000451909 266 ntBASIC13.05□□□□□ -0.32
PRKDCP78527 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.05□□□□□ -0.32
PRKDCP78527 AC067863.1-201ENST00000494933 530 ntBASIC13.05□□□□□ -0.32
PRKDCP78527 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
PRKDCP78527 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.05□□□□□ -0.32
PRKDCP78527 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
PRKDCP78527 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
PRKDCP78527 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.05□□□□□ -0.32
PRKDCP78527 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 COX5BP8-201ENST00000416911 349 ntBASIC13.05□□□□□ -0.32
PRKDCP78527 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC13.05□□□□□ -0.32
PRKDCP78527 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC13.05□□□□□ -0.32
PRKDCP78527 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
PRKDCP78527 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC13.05□□□□□ -0.32
PRKDCP78527 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.04□□□□□ -0.32
PRKDCP78527 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.04□□□□□ -0.32
PRKDCP78527 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.04□□□□□ -0.32
PRKDCP78527 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 AC007967.3-201ENST00000434308 558 ntBASIC13.04□□□□□ -0.32
PRKDCP78527 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.04□□□□□ -0.32
PRKDCP78527 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC13.04□□□□□ -0.32
PRKDCP78527 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
PRKDCP78527 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.04□□□□□ -0.32
PRKDCP78527 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 FO538757.1-201ENST00000623083 1397 ntBASIC13.04□□□□□ -0.32
PRKDCP78527 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 MIR4751-201ENST00000578027 74 ntBASIC13.04□□□□□ -0.32
PRKDCP78527 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
PRKDCP78527 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
PRKDCP78527 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC13.04□□□□□ -0.32
PRKDCP78527 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
PRKDCP78527 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.04□□□□□ -0.32
PRKDCP78527 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC13.03□□□□□ -0.32
PRKDCP78527 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
PRKDCP78527 IRX1P1-201ENST00000438849 1838 ntBASIC13.03□□□□□ -0.32
PRKDCP78527 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
PRKDCP78527 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.03□□□□□ -0.32
PRKDCP78527 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.03□□□□□ -0.32
PRKDCP78527 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.03□□□□□ -0.32
PRKDCP78527 MED17-221ENST00000639724 2317 ntTSL 5 BASIC13.03□□□□□ -0.32
PRKDCP78527 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
PRKDCP78527 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.03□□□□□ -0.32
PRKDCP78527 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
PRKDCP78527 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms