Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.62■□□□□ 0.09
ABCA4P78363 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.62■□□□□ 0.09
ABCA4P78363 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.62■□□□□ 0.09
ABCA4P78363 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.62■□□□□ 0.09
ABCA4P78363 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.62■□□□□ 0.09
ABCA4P78363 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
ABCA4P78363 SDHAP2-201ENST00000455183 2001 ntBASIC15.61■□□□□ 0.09
ABCA4P78363 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.61■□□□□ 0.09
ABCA4P78363 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA4P78363 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 SCARNA2-201ENST00000458748 420 ntBASIC15.61■□□□□ 0.09
ABCA4P78363 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 AC106730.1-201ENST00000566722 1090 ntBASIC15.61■□□□□ 0.09
ABCA4P78363 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.61■□□□□ 0.09
ABCA4P78363 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.61■□□□□ 0.09
ABCA4P78363 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA4P78363 AP001269.4-201ENST00000609611 512 ntBASIC15.61■□□□□ 0.09
ABCA4P78363 MIR7706-201ENST00000613747 67 ntBASIC15.61■□□□□ 0.09
ABCA4P78363 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC15.61■□□□□ 0.09
ABCA4P78363 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA4P78363 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
ABCA4P78363 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA4P78363 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC15.61■□□□□ 0.09
ABCA4P78363 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.61■□□□□ 0.09
ABCA4P78363 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.61■□□□□ 0.09
ABCA4P78363 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.61■□□□□ 0.09
ABCA4P78363 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 AC068587.9-201ENST00000641814 219 ntBASIC15.61■□□□□ 0.09
ABCA4P78363 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
ABCA4P78363 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.61■□□□□ 0.09
ABCA4P78363 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.6■□□□□ 0.09
ABCA4P78363 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.6■□□□□ 0.09
ABCA4P78363 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.6■□□□□ 0.09
ABCA4P78363 AC093909.1-201ENST00000504731 1122 ntBASIC15.6■□□□□ 0.09
ABCA4P78363 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
ABCA4P78363 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.6■□□□□ 0.09
ABCA4P78363 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 AC073130.3-201ENST00000624389 2278 ntBASIC15.6■□□□□ 0.09
ABCA4P78363 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.6■□□□□ 0.09
ABCA4P78363 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.6■□□□□ 0.09
ABCA4P78363 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.6■□□□□ 0.09
ABCA4P78363 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
ABCA4P78363 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.6■□□□□ 0.09
ABCA4P78363 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
ABCA4P78363 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
ABCA4P78363 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC15.59■□□□□ 0.09
ABCA4P78363 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.59■□□□□ 0.09
ABCA4P78363 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.59■□□□□ 0.09
ABCA4P78363 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms