Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA3P55318 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
FOXA3P55318 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA3P55318 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA3P55318 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
FOXA3P55318 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA3P55318 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA3P55318 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA3P55318 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA3P55318 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA3P55318 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 MIR638-201ENST00000385237 100 ntBASIC13.67□□□□□ -0.22
FOXA3P55318 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
FOXA3P55318 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC13.67□□□□□ -0.22
FOXA3P55318 AC016769.1-201ENST00000409132 1010 ntBASIC13.67□□□□□ -0.22
FOXA3P55318 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA3P55318 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC13.67□□□□□ -0.22
FOXA3P55318 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA3P55318 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 AL121832.2-201ENST00000610979 668 ntBASIC13.67□□□□□ -0.22
FOXA3P55318 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 AL121829.2-201ENST00000620908 328 ntBASIC13.67□□□□□ -0.22
FOXA3P55318 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
FOXA3P55318 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA3P55318 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
FOXA3P55318 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC13.66□□□□□ -0.22
FOXA3P55318 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA3P55318 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
FOXA3P55318 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC13.66□□□□□ -0.22
FOXA3P55318 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA3P55318 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 MAZ-216ENST00000616501 991 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
FOXA3P55318 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA3P55318 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA3P55318 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA3P55318 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms