Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
ERCC3P19447 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
ERCC3P19447 AP000593.1-201ENST00000393668 712 ntBASIC21.02■□□□□ 0.96
ERCC3P19447 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.02■□□□□ 0.96
ERCC3P19447 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 TSPY12P-201ENST00000421279 868 ntBASIC21.02■□□□□ 0.96
ERCC3P19447 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.02■□□□□ 0.96
ERCC3P19447 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
ERCC3P19447 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.02■□□□□ 0.96
ERCC3P19447 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.02■□□□□ 0.96
ERCC3P19447 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
ERCC3P19447 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC3P19447 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.02■□□□□ 0.96
ERCC3P19447 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ERCC3P19447 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
ERCC3P19447 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
ERCC3P19447 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ERCC3P19447 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.02■□□□□ 0.95
ERCC3P19447 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.02■□□□□ 0.95
ERCC3P19447 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 AC026471.1-201ENST00000564629 3026 ntBASIC21.01■□□□□ 0.95
ERCC3P19447 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
ERCC3P19447 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.01■□□□□ 0.95
ERCC3P19447 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.01■□□□□ 0.95
ERCC3P19447 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 LETM1P2-201ENST00000597330 2178 ntBASIC21.01■□□□□ 0.95
ERCC3P19447 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ERCC3P19447 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC3P19447 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ERCC3P19447 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
ERCC3P19447 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
ERCC3P19447 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
ERCC3P19447 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ERCC3P19447 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
ERCC3P19447 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21■□□□□ 0.95
ERCC3P19447 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21■□□□□ 0.95
ERCC3P19447 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21■□□□□ 0.95
ERCC3P19447 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC3P19447 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
ERCC3P19447 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC3P19447 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC3P19447 POM121L3P-201ENST00000419331 1163 ntBASIC20.99■□□□□ 0.95
ERCC3P19447 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC3P19447 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC3P19447 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.99■□□□□ 0.95
ERCC3P19447 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.99■□□□□ 0.95
ERCC3P19447 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.99■□□□□ 0.95
ERCC3P19447 BNIP3P18-201ENST00000593976 575 ntBASIC20.99■□□□□ 0.95
ERCC3P19447 TP73-AS1-207ENST00000624167 988 ntBASIC20.99■□□□□ 0.95
ERCC3P19447 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC3P19447 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.99■□□□□ 0.95
ERCC3P19447 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC3P19447 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms