Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.85■□□□□ 0.61
COL6A3P12111 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A3P12111 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A3P12111 AC068587.10-201ENST00000641210 219 ntBASIC18.85■□□□□ 0.61
COL6A3P12111 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A3P12111 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL6A3P12111 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.85■□□□□ 0.61
COL6A3P12111 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.85■□□□□ 0.61
COL6A3P12111 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.85■□□□□ 0.61
COL6A3P12111 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A3P12111 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A3P12111 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A3P12111 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A3P12111 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.84■□□□□ 0.61
COL6A3P12111 AL512356.2-201ENST00000546955 174 ntBASIC18.84■□□□□ 0.61
COL6A3P12111 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.84■□□□□ 0.61
COL6A3P12111 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.84■□□□□ 0.61
COL6A3P12111 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL6A3P12111 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A3P12111 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.84■□□□□ 0.61
COL6A3P12111 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A3P12111 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A3P12111 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL6A3P12111 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
COL6A3P12111 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.84■□□□□ 0.61
COL6A3P12111 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL6A3P12111 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
COL6A3P12111 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL6A3P12111 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.83■□□□□ 0.61
COL6A3P12111 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.83■□□□□ 0.61
COL6A3P12111 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
COL6A3P12111 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A3P12111 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A3P12111 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.83■□□□□ 0.61
COL6A3P12111 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.83■□□□□ 0.61
COL6A3P12111 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL6A3P12111 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.83■□□□□ 0.61
COL6A3P12111 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A3P12111 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
COL6A3P12111 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A3P12111 IGHV3-65-201ENST00000523210 341 ntBASIC18.83■□□□□ 0.6
COL6A3P12111 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A3P12111 AC008677.1-201ENST00000519230 1561 ntBASIC18.83■□□□□ 0.6
COL6A3P12111 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A3P12111 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.83■□□□□ 0.6
COL6A3P12111 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL6A3P12111 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
COL6A3P12111 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.83■□□□□ 0.6
COL6A3P12111 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL6A3P12111 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 AC107890.1-201ENST00000422478 521 ntBASIC18.82■□□□□ 0.6
COL6A3P12111 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A3P12111 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A3P12111 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A3P12111 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL6A3P12111 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A3P12111 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A3P12111 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.82■□□□□ 0.6
COL6A3P12111 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.82■□□□□ 0.6
COL6A3P12111 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC18.82■□□□□ 0.6
COL6A3P12111 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL6A3P12111 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.82■□□□□ 0.6
COL6A3P12111 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.82■□□□□ 0.6
COL6A3P12111 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.82■□□□□ 0.6
COL6A3P12111 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 AC125807.1-201ENST00000483097 614 ntBASIC18.81■□□□□ 0.6
COL6A3P12111 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.81■□□□□ 0.6
COL6A3P12111 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A3P12111 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
COL6A3P12111 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A3P12111 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A3P12111 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL6A3P12111 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A3P12111 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.81■□□□□ 0.6
COL6A3P12111 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A3P12111 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A3P12111 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A3P12111 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms