Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
MMP3P08254 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
MMP3P08254 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.07■□□□□ 0.8
MMP3P08254 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.07■□□□□ 0.8
MMP3P08254 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 RPL18-209ENST00000550645 463 ntTSL 5 BASIC20.07■□□□□ 0.8
MMP3P08254 RPL18-214ENST00000552588 559 ntTSL 3 BASIC20.07■□□□□ 0.8
MMP3P08254 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.07■□□□□ 0.8
MMP3P08254 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
MMP3P08254 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
MMP3P08254 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
MMP3P08254 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.06■□□□□ 0.8
MMP3P08254 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
MMP3P08254 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
MMP3P08254 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
MMP3P08254 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.06■□□□□ 0.8
MMP3P08254 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC20.06■□□□□ 0.8
MMP3P08254 KRT18P58-201ENST00000527480 1120 ntBASIC20.06■□□□□ 0.8
MMP3P08254 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.06■□□□□ 0.8
MMP3P08254 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.06■□□□□ 0.8
MMP3P08254 AC116407.3-201ENST00000623905 1129 ntBASIC20.06■□□□□ 0.8
MMP3P08254 AC117500.6-201ENST00000624871 588 ntBASIC20.06■□□□□ 0.8
MMP3P08254 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.06■□□□□ 0.8
MMP3P08254 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
MMP3P08254 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 ESPNP-201ENST00000270691 2015 ntBASIC20.05■□□□□ 0.8
MMP3P08254 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
MMP3P08254 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.05■□□□□ 0.8
MMP3P08254 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
MMP3P08254 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.05■□□□□ 0.8
MMP3P08254 AIRN-201ENST00000601203 4374 ntBASIC20.05■□□□□ 0.8
MMP3P08254 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.05■□□□□ 0.8
MMP3P08254 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.05■□□□□ 0.8
MMP3P08254 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 RPL13AP23-201ENST00000480739 586 ntBASIC20.05■□□□□ 0.8
MMP3P08254 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.05■□□□□ 0.8
MMP3P08254 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.05■□□□□ 0.8
MMP3P08254 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
MMP3P08254 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.05■□□□□ 0.8
MMP3P08254 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
MMP3P08254 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
MMP3P08254 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
MMP3P08254 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
MMP3P08254 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.04■□□□□ 0.8
MMP3P08254 AL356309.3-201ENST00000624132 1934 ntBASIC20.04■□□□□ 0.8
MMP3P08254 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 AL031598.1-201ENST00000561511 1773 ntBASIC20.04■□□□□ 0.8
MMP3P08254 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
MMP3P08254 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.04■□□□□ 0.8
MMP3P08254 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 RPS2P1-201ENST00000434010 821 ntBASIC20.04■□□□□ 0.8
MMP3P08254 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.04■□□□□ 0.8
MMP3P08254 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.04■□□□□ 0.8
MMP3P08254 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.04■□□□□ 0.8
MMP3P08254 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.04■□□□□ 0.8
MMP3P08254 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
MMP3P08254 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.04■□□□□ 0.8
MMP3P08254 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
MMP3P08254 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.04■□□□□ 0.8
MMP3P08254 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms