Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 FAM220CP-201ENST00000395253 831 ntBASIC15.23■□□□□ 0.03
ABCA1O95477 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 AP003733.1-201ENST00000491725 852 ntBASIC15.23■□□□□ 0.03
ABCA1O95477 PGAM5P1-201ENST00000518923 814 ntBASIC15.23■□□□□ 0.03
ABCA1O95477 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC15.23■□□□□ 0.03
ABCA1O95477 KRT89P-201ENST00000620027 1478 ntBASIC15.23■□□□□ 0.03
ABCA1O95477 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.23■□□□□ 0.03
ABCA1O95477 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
ABCA1O95477 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
ABCA1O95477 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.23■□□□□ 0.03
ABCA1O95477 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.23■□□□□ 0.03
ABCA1O95477 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ABCA1O95477 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.23■□□□□ 0.03
ABCA1O95477 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.23■□□□□ 0.03
ABCA1O95477 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ABCA1O95477 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.22■□□□□ 0.03
ABCA1O95477 AC011840.4-201ENST00000578471 627 ntBASIC15.22■□□□□ 0.03
ABCA1O95477 AC027601.4-201ENST00000611259 610 ntBASIC15.22■□□□□ 0.03
ABCA1O95477 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
ABCA1O95477 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.22■□□□□ 0.03
ABCA1O95477 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 GUSBP12-201ENST00000513727 720 ntBASIC15.22■□□□□ 0.03
ABCA1O95477 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 AC009065.1-201ENST00000564055 1225 ntBASIC15.22■□□□□ 0.03
ABCA1O95477 AC145285.3-201ENST00000564603 959 ntBASIC15.22■□□□□ 0.03
ABCA1O95477 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.22■□□□□ 0.03
ABCA1O95477 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.22■□□□□ 0.03
ABCA1O95477 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA1O95477 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA1O95477 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA1O95477 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA1O95477 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA1O95477 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA1O95477 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.21■□□□□ 0.03
ABCA1O95477 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA1O95477 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA1O95477 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.21■□□□□ 0.03
ABCA1O95477 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ABCA1O95477 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ABCA1O95477 AL353692.3-201ENST00000407031 1396 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms