Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
SEMA3DO95025 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SEMA3DO95025 AC113347.1-201ENST00000413321 391 ntBASIC17.43■□□□□ 0.38
SEMA3DO95025 LIN28AP1-201ENST00000429574 405 ntBASIC17.43■□□□□ 0.38
SEMA3DO95025 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.43■□□□□ 0.38
SEMA3DO95025 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.43■□□□□ 0.38
SEMA3DO95025 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.43■□□□□ 0.38
SEMA3DO95025 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 AL031432.5-201ENST00000641059 760 ntBASIC17.43■□□□□ 0.38
SEMA3DO95025 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.43■□□□□ 0.38
SEMA3DO95025 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.43■□□□□ 0.38
SEMA3DO95025 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SEMA3DO95025 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.43■□□□□ 0.38
SEMA3DO95025 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.43■□□□□ 0.38
SEMA3DO95025 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SEMA3DO95025 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 AL096828.2-201ENST00000567259 1965 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 BCL2-203ENST00000589955 5011 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 FLJ13224-201ENST00000313737 1514 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.42■□□□□ 0.38
SEMA3DO95025 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.42■□□□□ 0.38
SEMA3DO95025 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 AC034232.1-201ENST00000506026 1064 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.42■□□□□ 0.38
SEMA3DO95025 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
SEMA3DO95025 AC005363.2-201ENST00000618631 242 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.42■□□□□ 0.38
SEMA3DO95025 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 AC093010.1-201ENST00000473625 1624 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.42■□□□□ 0.38
SEMA3DO95025 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.42■□□□□ 0.38
SEMA3DO95025 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.42■□□□□ 0.38
SEMA3DO95025 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SEMA3DO95025 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SEMA3DO95025 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SEMA3DO95025 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
SEMA3DO95025 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.41■□□□□ 0.38
SEMA3DO95025 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 LINC01126-201ENST00000623515 1646 ntBASIC17.41■□□□□ 0.38
SEMA3DO95025 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 PVRIG2P-201ENST00000435460 978 ntBASIC17.41■□□□□ 0.38
SEMA3DO95025 SLC25A6P5-201ENST00000435663 894 ntBASIC17.41■□□□□ 0.38
SEMA3DO95025 ATP5G1P1-201ENST00000448724 379 ntBASIC17.41■□□□□ 0.38
SEMA3DO95025 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.41■□□□□ 0.38
SEMA3DO95025 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SEMA3DO95025 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.41■□□□□ 0.38
SEMA3DO95025 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
SEMA3DO95025 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SEMA3DO95025 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms