Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC25.45■■□□□ 1.66
NPHP4O75161 LINC01126-201ENST00000623515 1646 ntBASIC25.45■■□□□ 1.66
NPHP4O75161 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
NPHP4O75161 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP4O75161 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP4O75161 AC122714.2-201ENST00000502787 707 ntBASIC25.45■■□□□ 1.66
NPHP4O75161 CD63-210ENST00000550776 870 ntTSL 5 BASIC25.45■■□□□ 1.66
NPHP4O75161 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP4O75161 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC25.45■■□□□ 1.66
NPHP4O75161 AC004835.2-201ENST00000603762 682 ntBASIC25.45■■□□□ 1.66
NPHP4O75161 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC25.45■■□□□ 1.66
NPHP4O75161 AC010654.1-201ENST00000615722 808 ntBASIC25.45■■□□□ 1.66
NPHP4O75161 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC25.44■■□□□ 1.66
NPHP4O75161 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 KRT8P47-201ENST00000604727 1398 ntBASIC25.44■■□□□ 1.66
NPHP4O75161 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
NPHP4O75161 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC25.44■■□□□ 1.66
NPHP4O75161 AC109322.1-201ENST00000524499 1264 ntBASIC25.44■■□□□ 1.66
NPHP4O75161 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC25.44■■□□□ 1.66
NPHP4O75161 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
NPHP4O75161 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
NPHP4O75161 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC25.43■■□□□ 1.66
NPHP4O75161 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC25.43■■□□□ 1.66
NPHP4O75161 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
NPHP4O75161 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 METTL26-204ENST00000397665 558 ntTSL 2 BASIC25.43■■□□□ 1.66
NPHP4O75161 AC004461.1-201ENST00000412461 403 ntBASIC25.43■■□□□ 1.66
NPHP4O75161 AC015922.1-201ENST00000421102 1152 ntBASIC25.43■■□□□ 1.66
NPHP4O75161 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC25.43■■□□□ 1.66
NPHP4O75161 AC069262.1-201ENST00000539058 672 ntBASIC25.43■■□□□ 1.66
NPHP4O75161 AL390955.2-201ENST00000603032 514 ntBASIC25.43■■□□□ 1.66
NPHP4O75161 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC25.43■■□□□ 1.66
NPHP4O75161 AJ011932.1-201ENST00000621707 465 ntBASIC25.43■■□□□ 1.66
NPHP4O75161 AC004877.2-201ENST00000623941 599 ntBASIC25.43■■□□□ 1.66
NPHP4O75161 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NPHP4O75161 ADK-206ENST00000541550 2222 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
NPHP4O75161 ADM-208ENST00000534464 1640 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NPHP4O75161 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC25.42■■□□□ 1.66
NPHP4O75161 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC25.42■■□□□ 1.66
NPHP4O75161 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 AC012645.4-201ENST00000610691 1061 ntBASIC25.42■■□□□ 1.66
NPHP4O75161 AC091812.2-201ENST00000619081 385 ntBASIC25.42■■□□□ 1.66
NPHP4O75161 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC25.42■■□□□ 1.66
NPHP4O75161 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NPHP4O75161 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NPHP4O75161 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
NPHP4O75161 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NPHP4O75161 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NPHP4O75161 POLD4-207ENST00000531239 584 ntTSL 2 BASIC25.41■■□□□ 1.66
NPHP4O75161 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC25.41■■□□□ 1.66
NPHP4O75161 RIN3-211ENST00000557762 517 ntTSL 3 BASIC25.41■■□□□ 1.66
NPHP4O75161 TK1-204ENST00000590430 683 ntTSL 3 BASIC25.41■■□□□ 1.66
NPHP4O75161 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC25.41■■□□□ 1.66
NPHP4O75161 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC25.41■■□□□ 1.66
NPHP4O75161 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NPHP4O75161 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NPHP4O75161 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC25.41■■□□□ 1.66
NPHP4O75161 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC25.41■■□□□ 1.66
NPHP4O75161 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NPHP4O75161 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC25.41■■□□□ 1.66
NPHP4O75161 PC-214ENST00000628663 1470 ntTSL 5 BASIC25.41■■□□□ 1.66
NPHP4O75161 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
NPHP4O75161 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC25.4■■□□□ 1.66
NPHP4O75161 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
NPHP4O75161 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC25.4■■□□□ 1.66
NPHP4O75161 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC25.4■■□□□ 1.66
NPHP4O75161 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC25.4■■□□□ 1.66
NPHP4O75161 SMN2-210ENST00000511812 867 ntTSL 2 BASIC25.4■■□□□ 1.66
NPHP4O75161 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC25.4■■□□□ 1.66
NPHP4O75161 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC25.4■■□□□ 1.66
NPHP4O75161 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NPHP4O75161 BCAR1-209ENST00000546196 1340 ntBASIC25.4■■□□□ 1.66
NPHP4O75161 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
NPHP4O75161 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NPHP4O75161 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NPHP4O75161 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC25.39■■□□□ 1.66
NPHP4O75161 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NPHP4O75161 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
NPHP4O75161 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC25.39■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms