Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
SLC28A1O00337 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC28A1O00337 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC28A1O00337 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.54■□□□□ 0.4
SLC28A1O00337 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC28A1O00337 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC28A1O00337 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.54■□□□□ 0.4
SLC28A1O00337 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.54■□□□□ 0.4
SLC28A1O00337 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SLC28A1O00337 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SLC28A1O00337 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SLC28A1O00337 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 KRT18P55-202ENST00000578578 1546 ntBASIC17.53■□□□□ 0.4
SLC28A1O00337 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SLC28A1O00337 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.53■□□□□ 0.4
SLC28A1O00337 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SLC28A1O00337 AL390955.1-201ENST00000428694 934 ntBASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.53■□□□□ 0.4
SLC28A1O00337 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SLC28A1O00337 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.53■□□□□ 0.4
SLC28A1O00337 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SLC28A1O00337 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SLC28A1O00337 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
SLC28A1O00337 KRT17P2-201ENST00000300992 1314 ntBASIC17.52■□□□□ 0.4
SLC28A1O00337 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.52■□□□□ 0.4
SLC28A1O00337 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.52■□□□□ 0.4
SLC28A1O00337 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.52■□□□□ 0.4
SLC28A1O00337 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.52■□□□□ 0.4
SLC28A1O00337 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.52■□□□□ 0.4
SLC28A1O00337 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.52■□□□□ 0.4
SLC28A1O00337 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.52■□□□□ 0.4
SLC28A1O00337 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SLC28A1O00337 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.52■□□□□ 0.4
SLC28A1O00337 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.52■□□□□ 0.4
SLC28A1O00337 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.52■□□□□ 0.4
SLC28A1O00337 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
SLC28A1O00337 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
SLC28A1O00337 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SLC28A1O00337 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC28A1O00337 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC28A1O00337 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.52■□□□□ 0.39
SLC28A1O00337 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
SLC28A1O00337 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
SLC28A1O00337 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SLC28A1O00337 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.52■□□□□ 0.39
SLC28A1O00337 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SLC28A1O00337 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms